Bread – How to diagnose and adjust the bread recipe

Without seeing the loaves or knowing your exact procedures, it's hard to guess. My money would be on too dry a dough. Could also be inactive starter, too long a bake, not a hot enough bake, not enough rise time/temperature. So I'll just talk about how I make sourdough in the hopes it'll help. These are techniques I've learned from various books (most notably Reinhart's The Bread Baker's Apprentice) and experiences.

If I did it right, you can click any of the thumbnails for full size images.

First order of business, of course, is having a nice, active starter. I build my final starter from the barm the day before. Depending on my schedule, I either leave it at room temp all night or feed it earlier in the day and pop it in the fridge. It then comes out to warm up a few hours before I bake. It should show strong signs of life. This starter was made with nothing but flour and water--no grapes, no commercial yeast, no juice.

Then comes mixing and kneading. I like to mix the starter with the water first, allowing the starter to break up and dissolve a bit. This ensures good mixing with the final dough. Then I add the flour and salt, mix to a coarse ball...

...and switch to the dough hook for 5 minutes or so. The dough should be stickier than you think it should be. Turn it out onto a floured surface for 4-5 minutes of final kneading by hand to adjust the flour. It should be smooth and supple, still be a bit tacky, and pass the windowpane test. When you stretch it to form a boule, the outside should be smooth and not tear.

Let it rise 3-4 hours at room temp or slightly warmer (a closed oven with a bowl of hot water works well). Then shape and proof for another 3-4 hours.

I start with a very hot oven. 500-550F for artisan loaves. If using a stone, get it in there 45-60 minutes before baking, that way the stone and oven get a good heat soak. Then when the loaves go in, you want to create steam to allow the bread to rise before the crust hardens. A steam pan is a good idea, and I also spray down the walls of the oven with a squirt bottle. Be careful of squirting the light bulb--it will shatter. Don't ask me how I know. After a few squirts, turn the heat down to your final baking temp. I usually go with 450F.

Don't forget to slash them, too. That helps them expand and prevents blowouts. I had some issues getting these guys onto the stone (not my finest hour), but they were still outstanding. You can see the crumb is open and light, but still gelatinized and chewy. Perfect, in my book.

Ok, this is going to be a long post, so patience, please.

1. Ratios and gluten
   Your dough has a pretty mainstream ingredient list, meaning average hydration and a rather high yeast content. Whith the whole wheat you could go a notch wetter, but that is a question for another day.
   As you are not using any slow-raise / stretch-and-fold method, you need to develop your gluten by mechanical kneading. A few minutes in a machine sounds like the minimum of time, not like overkneading. Go by the appearance of the dough: It should go from lumpy to homogenous to very smooth, or at least mostly so if your whole wheat is very coarse. (How to handle this would be another question.) Only after that stage would you get to "overknead" and the dough tears. An overkneaded dough would have serious trouble rising at all, because the glutem strands are torn and can't hold the CO2.

2. Timing
   I'm actually surprised that your dough is even willing and able to rise after a six hour first raise. My gut feeling, reading your ratios and with regard to the fact that you put the bowl in warm water, would be one hour maximum for the first rise. Whether such a fast rise is desirable is again another question. The general rule with yeast is to use visual clues, not a timer. Unless your recipe states otherwise, go for

   first raise = double volume.

   As I am currently baking, let me share a few photos:

   
   (Please ignore the bad quality, I had originally snapped the first photo only as visual reminder for me...)

   This is also true for the second rise:

   

   Ideally you want to bake your bread when it's slightly underproofed to maximize oven spring. Oven spring is not only a funny show to watch, but it means a light and fluffy loaf.

   If you greatly exceed raising times, two things will happen: First, your yeast will be "spent", loosing the ability to "lift" your dough, second, the gluten structure that you created while kneading, can weaken, causing the dough to fall flat.

3. Tension
   When shaping your loaf, you want to keep the gas bubbles mainly intact. This does not mean that you can't touch the dough, just that you shouldn't knead in the sense of "mixing thoroughly" (there are exceptions).
   What you do want, though, is a taut surface of your loaf: Just like with a balloon, this will help your loaf to expand in all directions instead of flowing outwards. You are not destroing gluten here, but actually using it.

   There are many techniques, most are either based on a round "ball" which can then be pushed into a longish loaf, if desired, or start with a "roulade" of dough. The latter is typically used for baguette.

   For a boule (round loaf):

   

   First fold the dough towards the middle or slightly off-center (above: after three folds) until the surface (= the underside) of the loaf is taut. Then turn it over and rotate the loaf a few times on a non-floured surface, pressing the edges "down and under" with the edge of your hand.

   For a baguette:

   

   First gently flatten the dough in a somewhat rectangular shape. Pull the far end up and push hard with all ten fingers down to seal. Repeat until all dough is rolled up. Hold your thumb parallel to the long axis and pull the dough over your thumb towards you. Work your way along the loaf, creating mainly crosswise tension. Roll gently to smooth out and shape the edges.

   Normally I use this only for real baguette, which is way thinner than the loaf here, but for the sake of a better explanation, I used the "baguette technique".

4. Tools
   Note that I am using two different bannetons here - basically because I have them and because I can maneuver the loaves easily. If you look at the photos of the second proofing, you will notice that the loaves are quite "stable" per se. For (softer) baguette, a couche or, in a pinch, a floured linnen towel helps keeping them in shape. Place the baguettes between raised folds like I did with these breakfast buns: