I essentially want to wash away the excess water and already consumed flour after I've fed my culture. What I usually do is whisk the culture and pour off the excess down to 1 cup. I then add more flour and water and then store it in a mason jar in my refrigerator until I feel like baking again. This works, but I've always been curious how the commercial factories create a yeast cake that is sold in some grocery stores or specialty shops.
Sourdough Baking – How to Create the Equivalent of Fresh Cake Yeast from Sourdough Culture
sourdoughyeast
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Best Answer
Food Grade Yeasts, Food Technol. Biotechnol. 44 (3) 407–415 (2006) describes the process by which yeast is commercially prepared in good detail for an overview.
There are several stages of cultivation and growing and increasing the yeast biomass, culminating as its final steps:
Note that this process requires assorted items of industrial or laboratory equipment which may not be suitable to the home environment, including centrifuges and filter presses or vacuuum filters.
If you really only want to preserve your starter strain without maintaining an active starter, simply drying a sample and then storing it in the freezer may be a better option. This process is described at Breadtopia.