If you are really set on doing this, just use the same amount by weight or volume, preferably peeling the tomatoes first. (Cut an x in the bottom, dip in boiling water for 10 seconds, pull off the peel). You'll have plenty of liquid coming out of the tomato, don't worry about that. But honestly, I don't recommend doing this. Fresh tomatoes that are any good are so good uncooked that it is a waste, and fresh tomatoes that aren't good won't get better by cooking them. Even Mario Batali says you should use canned tomatoes for cooked sauces.
Generally, assuming a recipe in English, if you see the word order "3 pounds of tomatoes, cored" you should assume that you start with three pounds, and then core them. If you see "3 pounds of cored tomatoes", it suggests you should weigh them after coring.
However, the first is still rather imprecise, as the amount of impact from coring could depend on the size and variety of tomatoes, and how severely you cut. The second instruction would be slightly less imprecise, though variables like the amount of skin on each tomato will depend on their size. So, if I were writing a recipe, I'm not sure I would choose the first wording unless I also specified a size grade of tomatoes.
If the recipe was carefully tested, it probably was carefully tested based on the ingredients available in the region the author was from at a specific point in time. I read about a historical recipe for that started with "3 ears of corn" or something along that line, and the cookbook author who rediscovered the recipe quickly realized that the size of 1980s ears of corn was much larger than 1800s-era ears of corn. So keep in mind that a recipe is going to leave a lot of knowledge unspoken and dependent on context that may not match yours. If you feel the recipe was light on tomatoes, use more next time. Eventually it will be your recipe, rather than the author's.
Best Answer
Unless specified, I would assume before cored and peeled.
And in general for any ingredient, unless explicitly specified: Raw, as bought in the store, before cleaning and/or preparation.
It makes assembling a shopping list easier, it makes buying easier, it makes writing a recipe easier, and it makes cooking a recipe easier.