Learn English – You are in Jonathan’s circles: “too” or “as well” or “also”

This is covered in the Cambridge Grammar of the English Language (CGEL), as it turns out, in Chapter 18, “Inflection Morphology and Related Matters”, section 6, “Phonological reduction and liaison”.

The form ’s, representing either has or is, along with ’m (am), ’re (are), ’ve (have), ’ll (will), and ’d (had or would) are called clitics, and they are a variant of what are known as weak forms of words, which are pronunciations of words like a, have, from, you, etc. (about fifty in total) with a reduced vowel, such as schwa.

In the discussion of weak and strong forms, CGEL points out that there are certain grammatical contexts that require strong forms, and one of those contexts is something called stranding, where the object of a phrase is preposed (moved before the phrase). These are examples they give of stranding requiring strong forms:

a. Who did you give it [to __ ]?
b. We’ll help you if we [can __].
c. They want me to resign, but I don’t intend [to __].

In each of these cases, the word in the brackets has a weak form, but it cannot be used in this context because its object has been stranded. Of course, in written English, there is no difference between weak and strong forms—it’s only a spoken difference—but clitics are distinguished in written English, and the restriction on weak forms also extends to clitics. (There are additional restrictions on clitics, but they are not relevant to this discussion).

So, thus we can say that the second is in the sentence It is what it [is __] cannot be reduced to either a weak form or to a clitic because of the restriction to strong forms in cases of syntactic stranding.

I don't think they are interchangeable in every case. "I forgot my homework too" implies that you have forgotten your homework and some other thing(s), whereas, "I too forgot my homework" implies that you and someone else have forgotten to bring their homework. "Peter ate the pie too" or "Peter drank the juice too" means he ate/drank pie/juice and some other thing(s), and "Peter also ate the pie" or "Peter also drank the juice" means he and someone else ate/drank the pie/juice.