Related to this question: What does the treasure chest icon indicate on the map tooltip for Shrines?
There's an indicator if all treasures in a shrine have been opened. For those who have the counter for 100% completion, does the treasure in the shrines count for 100% completion? (If you go into a completed shrine, and get the missing treasures in the shrine, does the counter in the slate move at all?)
Best Answer
This IGN page states that the only thing that counts towards the completion percentage on the Sheikah Slate are:
Basically, it appears that location discoveries are the only thing that count for that completion percentage. The page also states that quests and the Hyrule Compendium do not count.
They break the percentage down into 4 categories which each yield a different amount towards the 100%: