fallout-4
During the mission "Plugging the Leak", once you work out who is helping the synths escape from the Institute he tries to bargain with you and comes up with an alternate plan that involves framing the acting director of the synth retention bureau, Justin Ayo.
What are the consequences of framing Justin Ayo?
Sleeping will give you the "Well Rested" state, which increases your experience gain by 10%.
It also allows you to skip time in game so you can wait for Supply Routes to set up for the first time or skip ahead to the daylight for the various daylight perks like Solar Powered (or night time perks like Night Person, if you've gone for those).
They'll destroy as many structures within the settlement and kill as many people as possible. You'll have the opportunity to repair anything that is broken in Workshop mode:
Obviously if settlers die, that's final.
For a duration of time, the happiness level of the settlement will also be impacted. This is especially the case if sufficient damage has been caused to the structures of the settlement to cause a shortage in any resources (power, water, food).
Best Answer
Justin Ayo will be banished to the surface. The corsers and Justin will be gone, a new head of synth reclamation will be put into place. I've not seen any consequences from this action as if yet, just that guy being gone.