You can attack three times.
Your first ambiguity isn't really ambiguous at all. The distinction between an Attack action and an attack is pretty clear. Heck, both of the quotes in your question make that distinction.
For reference, the Attack action is defined as:
The most common action to take in combat is the Attack
action, whether you are swinging a sword, firing an
arrow from a bow, or brawling with your fists.
With this action, you make one melee or ranged
attack. See the “Making an Attack” section for the rules
that govern attacks.
Certain features, such as the Extra Attack feature
of the fighter, allow you to make more than one attack
with this action.
Just like the quotes in your question, it refers to the Attack action and an attack as two entirely separate things. So "you can use a bonus action to attack" means that you can use a bonus action to make one attack, not to take the Attack action.
Your second ambiguity is ambiguous; it could mean that each attack with a one-handed weapon allows you to use a bonus action to attack or that the Attack action as a whole does. Fortunately, it doesn't really matter, because:
You can take only one bonus action on your turn, so
you must choose which bonus action to use when you
have more than one available.
So even if every attack you make with a one-handed weapon allows you to make an attack as a bonus action, you can still only take one bonus action and make one attack.
To address your comment, we have the preceding text from the definition of bonus actions:
You can take a bonus
action only when a special ability, spell, or other feature
of the game states that you can do something as a bonus
action. You otherwise don’t have a bonus action to take.
You don't have a bonus action that Crossbow Expert allows you to make attacks with. Crossbow Expert gives you a bonus action consisting of a single attack. Even if it gives you that bonus action twice, (or up to 4 times for high level Fighters), you can still only take it once.
Official
Yes, it is confirmed by Crawford
@mpetruzz @mikemearls Crossbow Expert does allow a character to shoot a hand crossbow as an action and again as a bonus action.
Note that later, Crawford himself states that this is simply "how it is written" and that it is "murky"
@MLenser The feat is, without a doubt, murky. It's on my list of things to clear up in a future printing. @mikemearls
This tweet answer was later included in the Sage Advice Compendium
Does Crossbow Expert let you fire a hand crossbow and
then fire it again as a bonus action? It does! Take a look
at the feat’s third benefit. It says you can attack with a hand
crossbow as a bonus action when you use the Attack action
to attack with a one-handed weapon. A hand crossbow is
a one-handed weapon, so it can, indeed, be used for both
attacks, assuming you have a hand free to load the hand
crossbow between the two attacks.
House-ruling
Ultimately, it's up to DM's discretion if it should be allowed or not. Mearls states
@GX_Sigma @Eoffram_Troyas @Wizards_DnD I'd rule it should specify a different weapon, not same weapon twice
However, note that Mearls is not the official rules guru for 5e - Crawford is - and the SAC is an official document. This tweet doesn't change the fact that the official answer is still: yes.
For balancing purposes, this is essentially giving an early Extra Attack to, for example, fighters that wouldn't be using their Bonus Action at 1st level anyway. It even adds the dex modifier to the second attack.
Best Answer
Under no circumstances is a wand classified as a one-handed weapon. It does not appear on the weapons table, and all it is capable of doing is letting the user cast the spell contained within:
The question is, does casting magic missile count as making a one-handed weapon attack? The answer is a resounding "No."