Identifying a scroll is different from deciphering a scroll and neither requires expending the scroll.
Identifying
The detect magic spell determines if there're any magic auras in the area on the first round, the number of magic auras and the most potent aura in the area on the second, and where exactly those auras are and how powerful each is on the third. With a successful Knowledge (arcana) skill check (DC 15 + spell level), the caster can determine the aura's school of magic; this check apparently takes no time and is part of the 3rd-round detect magic effect. Doing this would tell the caster only the school of the spell or spells on the scroll.
A 3-round thorough examination of the object while employing the detect magic spell permits the caster to "[i]dentify the properties of a magic item" with a successful Spellcraft check (DC 15 + scroll's caster level). This tells the caster everything about the magic item, with apparently one exception. The caster knows whether the scroll is arcane or divine, what level spell is on it, what level the spell or spells are scribed at, and so on, but identifying doesn't reveal exactly what spell is on the scroll; to do that the caster must decipher the scroll.
These 3 rounds are in addition to the first 3 rounds leading to pinpointing each aura in the area of the spell detect magic. Events happen in order unless stated to happen simultaneously.
(The analyze dweomer spell also reveals these properties, but the word dweomer is difficult to say without laughing.)
Deciphering
To find out which spell is on the scroll (and subsequently be able to activate it) the caster must decipher the scroll, which requires a successful full-round Spellcraft skill check (DC 20 + spell level), a successful 1-minute Use Magic Device skill check (DC 25 + spell level), or the read magic spell.
After the scroll's deciphered, that scroll's always deciphered for that caster. No further checks need be made, and the scroll can be employed normally.
Don't conflate identifying with deciphering. The hairs are fine and difficult to split but the game splits them anyway: When a caster identifies an item's properties, he gets command words, number of charges, and so on (pretty much just like he read the item's description from the book) but not the name of the spell on the scroll; the caster gets that and the ability to activate the scroll from deciphering the scroll.
Note: That's weird and the Pathfinder Role-playing Game buries that on page 490: "The writing on a scroll must be deciphered before a character can... know exactly what spell it contains." This also isn't exclusive to Pathfinder--both the Dungeons and Dragons 3.0 and 3.5 Dungeon Master's Guides have the exact same language in their Deciphering a Scroll sections (pages 203 and 238, respectively).
Note: A solid but dangerous case can be made for skipping the identification step if the caster already knows what he's dealing with, much in the same way someone proficient with a sword can just whack fools with the sword instead of learning its maker, properties, and history before he starts using it. The DM rolls secretly to determine if a character deciphers gibberish via the Linguistics skill, but the player rolls openly to decipher a magic scroll via the Spellcraft skill or Use Magic Device skill, so right there the player will know it's a magic scroll and, if successful in deciphering it, know the spell on it. The character can then try to activate the scroll, but--and this is really a DM's call--the character still won't know any of the scroll's properties (such as it's spell level or the scriber's caster level) because the character's not identified the scroll's properties. Just as Fighter Joe can still take swings with a magic sword without knowing its exact properties, Wizard Jim can decipher a scroll and, if he meets the requirements, cast the spell from the scroll without knowing exactly what's going to happen. I've never seen a player want to do that, but I'd totally let him. That could be hilarious.
Other Tidbits: There are spells that straight-up answer questions and get information; one could possibly use those and make a big pile of information about a scroll. There are feats and classes that are scroll-specific, and those might be useful. I've ignored both because they seem to be beyond the question's scope.
The Detect Magic spell states:
If the aura emanates from a magic item, you can attempt to identify its properties (see Spellcraft).
Spellcraft states:
Identify the properties of a magic item using detect magic: DC 15 + Item's CL
So what, you might ask, is a "property?" Well, they don't define in a legalese way exactly what is included in a magic item's properties, except to note that it definitely gets you command words ("The spells detect magic, identify, and analyze dweomer all reveal command words if the properties of the item are successfully identified..."). One simply has to assume from general English definition and logic that it gives you anything beyond that, including what the item even does.
I think it's best to interpret "properties" as "All of what it does, including charges, command words, and whatnot. Its full rules stat block." (Excepting, of course, other defined exceptions like artifacts and spells on a scroll.) Analyze dweomer specifically says it gets charges, but relying on a 6th level spell to get the charge level of a plain old wand is pretty lame IMO.
In earlier editions of D&D I was fine with not telling people charges and letting them find out when they ran out - it added a nice randomization factor - but in Pathfinder where the Christmas tree syndrome tends to dictate that it's players' God Given Right to liquidate all treasure for a union-decreed cost to buy other gear, not knowing charges and thus value would be an impediment.
Best Answer
By this level, in Eberron, the whole identify minigame is getting really old. Special items (artifacts, maybe some cursed items) might pose special challenges that are interesting, but random loot isn’t.
Magic Item Compendium to the rescue! This is a 3.5 book, but it’s a great one, well worth using in Pathfinder (and by-and-large, its items don’t really need much in the way of porting). In particular, within its pages you will find the artificer’s monocle, which can be combined either with a check from the artificer’s artificer knowledge class feature or with a casting of detect magic and 5 ranks (2 in PF) in Knowledge (arcana) to identify a magic item as with the identify spell. It costs 1,500 gp, and the identification process takes 1 minute.
So in your Pathfinder game, just allow the warforged artificer to find/buy/acquire/otherwise have such an item. Since it’s a GMPC, you don’t even really need Magic Item Compendium for this: it’s not really necessary to track the GMPC’s wealth or worry about item slots or whatever. This will allow the party to just spend a minute per item to identify all of them. And, of course, your special items that you wan to get more attention, you can always just rule as immune to identify for whatever reason.
I use these all the time, and strongly recommend them to every group. Personally, I find very little of interest in the identify minigame to begin with, but by 8th-level in Eberron it is particularly unnecessary. In fact, if a minute/item is still too slow, I would feel it more than reasonable to consider an 8th-level artificer or spellcaster capable of speeding up the process, and make it a round per item, or a minute to identify a whole pile of items, or whatever.