I've recently downloaded Pokemon go and I've caught a few but they only show when I caught them in my journal and not in the Pokemon folder where it names all the Pokemon that you've caught why is this???
Pokemon-go – My Pokemon that I’ve caught only show in the journal and not in the Pokemon folder
pokemon-go
Related Solutions
Update: The August 8th update has added hatches to the Journal.
It's not yet confirmed if eggs get added to the journal from Pokestops though, which I know your original question was asking about.
I tested just now - eggs from Pokestops do not show up in Journal still. Nice one, Niantic.
Nice catch!
Eggs from Pokestops are missing from the Journal.
I'm chalking this up to a bug!
The gym you're "attacking" is controlled by your team - you're training it.
When powering up friendly gyms, you are limited to one pokemon.
Update: As of 0.41.x, powering up friendly gyms are now 6v6.
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Best Answer
Back when your question was asked there were a lot of communication errors and server errors. These have since been resolved.
I too have seen this happen to me once or twice. And I've seen it happen on other people's phones too. This was a communication error with the server. The Pokemon are there, just not displayed.